BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB021F04SP1|AL427785
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1530 1622 0.0
3x_Contig76 176 8e-44
>3x_Contig1530
Length = 6216
Score = 1622 bits (812), Expect = 0.0
Identities = 855/874 (97%), Gaps = 2/874 (0%)
Strand = Plus / Plus
Query: 34 gttaacttgawagtggctagccgttgccttctgcgtgagg-gngctgcgtgtcaagtcta 92
|||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 1872 gttaacttgaaagtggctagccgttgccttctgcgtgagcagggctgcgtgtcaagtcta 1931
Query: 93 tggactcgactcttgcacatctacgtcttaggtttgcgccaattcgtggtaagctagggt 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1932 tggactcgactcttgcacatctacgtcttaggtttgcgccaattcgtggtaagctagggt 1991
Query: 153 caatgagcttataggtgttataaagactcgctggtgtttgtytccttgaggcwtacggct 212
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 1992 caatgagcttataggtgttataaagactcgctggtgtttgtctccttgaggcatacggct 2051
Query: 213 taatcaaaactctcaaagtttgacctcaaatcaggtaggaatacccgctgaacttaagca 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 taatcaaaactctcaaagtttgacctcaaatcaggtaggaatacccgctgaacttaagca 2111
Query: 273 tatcaataagcggaggaaaagaaaccaaccgggattgccttagtaacggcgagtgaagcg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 tatcaataagcggaggaaaagaaaccaaccgggattgccttagtaacggcgagtgaagcg 2171
Query: 333 ncaaaagctcaaatttgawatctggcgtcttcgacgtccgagttgtaatttgaagaaggc 392
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2172 gcaaaagctcaaatttgaaatctg-cgtcttcgacgtccgagttgtaatttgaagaaggc 2230
Query: 393 aactttgtagctggtccttgtctatgttccttggaacaggacgtcatagagggtgagawt 452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2231 aactttgtagctggtccttgtctatgttccttggaacaggacgtcatagagggtgagaat 2290
Query: 453 cccgtgtggcgaggatcccagttatttgtwaagtgctttcgacgagtcgagttgtttggg 512
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2291 cccgtgtggcgaggatcccagttatttgtaaagtgctttcgacgagtcgagttgtttggg 2350
Query: 513 aatgcagctctaagtgggtggtaaattccatctaaagctaaatattggcgagagaccgat 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 aatgcagctctaagtgggtggtaaattccatctaaagctaaatattggcgagagaccgat 2410
Query: 573 agcgaacaagtacagtgatggaaagatgaaaagaactttgawaagagagtgaaaaagtac 632
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2411 agcgaacaagtacagtgatggaaagatgaaaagaactttgaaaagagagtgaaaaagtac 2470
Query: 633 gtgawattgttgawagggaagggcatttgatcagacatggcgtttgcttcggctttcgct 692
|||| |||||||| |||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 2471 gtgaaattgttgaaagggaagggcatttgatcagacatggcgtttggttggggtttcgct 2530
Query: 693 gggccagcatcagttttagcggttggataaatcctcgggaatgtggctctgcttcggtag 752
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 gggccaccatcagttttagcggttggataaatcctcgggaatgtggctctgcttcggtag 2590
Query: 753 agtgttatagcccgtgggaatacagccagctgggactgaggattgcgacttttgtcaagg 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 agtgttatagcccgtgggaatacagccagctgggactgaggattgcgacttttgtcaagg 2650
Query: 813 atgctggcgtaatggttaaatgccgcccgtcttgaaacacggaccaaggagtctaacgtc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 atgctggcgtaatggttaaatgccgcccgtcttgaaacacggaccaaggagtctaacgtc 2710
Query: 873 tatgcgagtktttgggtgtaaaacccgtacgcgt 906
||||||||| ||||||||||||||||||||||||
Sbjct: 2711 tatgcgagtgtttgggtgtaaaacccgtacgcgt 2744
>3x_Contig76
Length = 894
Score = 176 bits (88), Expect = 8e-44
Identities = 316/395 (80%)
Strand = Plus / Plus
Query: 120 ttaggtttgcgccaattcgtggtaagctagggtcaatgagcttataggtgttataaagac 179
||||||||| | |||| |||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 372 ttaggtttgagaaaattagtggtaagatagggtaaatgagattataggtgttataaagaa 431
Query: 180 tcgctggtgtttgtytccttgaggcwtacggcttaatcaaaactctcaaagtttgacctc 239
| | |||||||||| | |||||| || || ||||| |||| | | ||||||||| |
Sbjct: 432 tagatggtgtttgtataattgaggaataaggattaataaaaaatataaaagtttgaaata 491
Query: 240 aaatcaggtaggaatacccgctgaacttaagcatatcaataagcggaggaaaagaaacca 299
|||| ||||||||||| | |||| ||||| |||| |||||| ||||||||||||| |
Sbjct: 492 aaataaggtaggaataaaagatgaaattaagaatataaataagaggaggaaaagaaaaaa 551
Query: 300 accgggattgccttagtaacggcgagtgaagcgncaaaagctcaaatttgawatctggcg 359
| ||||||| ||||||| || |||||||| | ||||| | |||||||| || ||| |
Sbjct: 552 aaagggattgaattagtaaaggagagtgaagaggaaaaagataaaatttgaaatatggag 611
Query: 360 tcttcgacgtccgagttgtaatttgaagaaggcaactttgtagctggtccttgtctatgt 419
| || || || |||||||||||||||||||| || ||||||| |||| |||| |||||
Sbjct: 612 tattagaagtaagagttgtaatttgaagaaggaaaatttgtagatggtaattgtatatgt 671
Query: 420 tccttggaacaggacgtcatagagggtgagawtcccgtgtggcgaggatcccagttattt 479
| |||||| |||| || ||||||||||||| | |||||| |||||| ||| ||||
Sbjct: 672 taattggaaaaggaagtaatagagggtgagaataaagtgtggagaggataaaagtaattt 731
Query: 480 gtwaagtgctttcgacgagtcgagttgtttgggaa 514
|| ||||| ||| || |||| ||||||||||||||
Sbjct: 732 gtaaagtgatttagaagagtagagttgtttgggaa 766
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.32
Gapped
Lambda K H
1.38 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3842
Number of Sequences: 1807
Number of extensions: 3842
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.3 bits)